FastQCFastQC Report
Wed 8 May 2024
EGAF00002876021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences606306
Total Bases43 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26540.43773276200466427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17940.29589019406042494No Hit
CTCCTAAGTAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT7320.12073111597114329Illumina Single End PCR Primer 1 (100% over 39bp)
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA6490.10704165883233879No Hit

[FAIL]Adapter Content

Adapter graph