FastQCFastQC Report
Wed 8 May 2024
EGAF00002876059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2078808
Total Bases147.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG149950.7213268373029159No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA55630.2676052814882375No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA44980.2163739989455496No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)