FastQCFastQC Report
Tue 7 May 2024
EGAF00002876087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5918
Total Bases420.1 kbp
Sequences flagged as poor quality0
Sequence length71
%GC29

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA164927.86414329165259No Hit
GTCTCTGGTTCTATAGTGCAAATGCTTTTATTAGCCAATAGGAATTTTAA470.7941872254139911No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA440.7434944237918215No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG440.7434944237918215No Hit
CCTTGCTAAATGGACATGTAACTGTGTGCTCCTTCCTATCAGTTTGTAAA420.7096992227103751No Hit
CAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCGAAAGGC410.6928016221696519No Hit
CCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGAC370.6252112200067591No Hit
CCTTTCGCCATGTTTTACCAGTCTGCTGTTATAACCTCTTAGGTTGTATC360.6083136194660358No Hit
GGAGCTTTTATACACTACATTTCTTTTTTATTATTATGAAGAATGGGATA340.5745184183845894No Hit
GTTTATATCTTCACCCTGTAATGGTTGGGACCAGGCCAATCCCTTCTCCA320.5407232173031429No Hit
GGAAGGAGAACCACCAGTGGTATGTGTGCAACAGAGAGAAATTATGCGAA320.5407232173031429No Hit
CCTAATTAAGGGTCATAGTTTAAACCCAAGGCTAAGTTAGCCACAAGCTA310.5238256167624198No Hit
GTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGT310.5238256167624198No Hit
GTGCCGGCCTCTGAGCAAGACAGTGCGCTTCAACGTGCTCAAGGTCACCA310.5238256167624198No Hit
ATGAGGGGACAGTGCAGCTACAGGATATGCCATCATGGCAGAAAGTTCTA300.5069280162216966No Hit
TGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTATTCTAATAACTGC290.4900304156809733No Hit
AGGCTACAGCAGTAGTCCAGGAAAGAGATGATGAAGGTCTGGATTGGAGT290.4900304156809733No Hit
GCTTCCTCAATGCTAGTATCAGTTCTTTGGAATACATGAAATATCTTGAC280.4731328151402501No Hit
GCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAA280.4731328151402501No Hit
GTACTTTGACAGAGGTTCCAGTAAACGAAAACTTGATTGTTTCCTTGTAT250.42244001351808047No Hit
GTGATGTTGTTTATAAATGAATGCCTCAGTTCTCTGCTACCCTTTTCACA240.4055424129773572No Hit
GGATGTCAGCTGCCAATTGTGTTTTCCTGCAGCAATTCCATAAACACATC240.4055424129773572No Hit
GACTGGAGCCTAAGCTGCCTGCTACTGGGCTTTACATGGTGACAGACATT230.388644812436634No Hit
GCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAA230.388644812436634No Hit
CATAAGATACATACTTGTGTGCAGAAAGTATCTTCCTCCAGGCTTGTAAT230.388644812436634No Hit
GGCGCGTTGGCACACGCCTGTAATCCCAGAATTTGGGAGGCCGAGGCAGG220.37174721189591076No Hit
CTATTACTATCAATAACATTTTGGAATTATAAGTTAAATTAAAAACTCTA220.37174721189591076No Hit
CAAACATTATTCCATCATTTGTGTTGATGGATATCCAGGCTTCTACAGTG210.35484961135518756No Hit
GTTGCTGATTGTTGGAGGTTCTTTTGGTCTTCGTGAGTTTTCTCAAATCC210.35484961135518756No Hit
GGCATGGTGGTGCGTGCCTATAGTCCCAGCTACTTGGAGGCTGAGGCAGG200.33795201081446435No Hit
GCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACA200.33795201081446435No Hit
GCCGAGGTTGACAAGGTCACAGGCAGGTTTAATGGCCAGTTTAAAACTTA190.3210544102737411No Hit
GCCACAAAACCCAATAGGCAATTTAGTATTTCTGAGTCTATGAAACCAAA190.3210544102737411No Hit
GTGGCATAGACTCCTTCACACATCACTGTGGCACCAGCAACTACTTCTTT190.3210544102737411No Hit
CCATACAGAGAAGATAAAAACCTCACTGGCACTGCCCGATATGCTAGCAT190.3210544102737411No Hit
TCACTTGTAACGTGTCATTAGAGTATGAGAAAACAGAAGTGAATTCTGGC190.3210544102737411No Hit
GATGATGAGAAACTGAAAAAGAGGAAGGAGCGATTTGGGATTGTCACAAG180.3041568097330179No Hit
ATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTAT180.3041568097330179No Hit
TCCTAGATTACTTATTGATTTAAAAACAAAAAAACACAAAAAAATAGTAA180.3041568097330179No Hit
GGAGGCAGAGGTTGCAGTGAGCTGAGATTTCACGACTGCACTCCAGCACT180.3041568097330179No Hit
CCTATTAAAGCTGTTCATTGTAACAAAATTCAATCAAAAAGGCAGCTAGG180.3041568097330179No Hit
CAGCTGTACATATGTGGATAAGCTGATTAATGGTTTTGCAACTGTAATAG170.2872592091922947No Hit
GCAAGACTCCATCTCAAAAAAAAAAAAGAAGAGGAAGAAGAAGAAGAAAA170.2872592091922947No Hit
GGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGC170.2872592091922947No Hit
ATGACAGGTTGATGGCTGCAGCAAACCACCATGGCACGCGTATACCTCTG170.2872592091922947No Hit
GAATCAGAAGACGAAGATGACAGCATCCCATCTGAAGTCACCATAGATAA160.27036160865157144No Hit
GTTTCTAGTTGAGGAGTTTCCTAAAAGTTCATAACAGTGCCATTGTCTTT160.27036160865157144No Hit
GTGAGCACAGAGGTGTTCATAAAATGGGAATTGAGTCCCACTCGGTAAGA160.27036160865157144No Hit
GGCTTTGTAAATTTAAATATGTAAGTGCTATATAAGTCAGGAGCAGCTGT160.27036160865157144No Hit
CCCCTACTTTTAATGGGTCTGGGTGGTGATAACAAGCAGAGCCTCAGAAA150.2534640081108483No Hit
GGTTGAAAACCTTGCTTATGATCCTGAGATTCATGAGTGTGATGGATTGG150.2534640081108483No Hit
AGATGAACGTGGCCGAGGTTGACAAGGTCACAGGCAGGTTTAATGGCCAG150.2534640081108483No Hit
GTTCTCCCCTCCAGGCCACCTGTCTCTGTAAAGGATGTCTGCTCTGTTCA150.2534640081108483No Hit
GAATTCCTTCAGGGTGATGCCAGGTTCTATTTGGAATTTATATACAACCT150.2534640081108483No Hit
CCTTCACTGAACATGCCTAGTCCAACATTTTTTCCCAGTGAGTCACATCC150.2534640081108483No Hit
GTATTATTTTCAATGAGGTGCCTTTCTTAACTGACCAAATGCTGCCTTGT150.2534640081108483No Hit
CATCATACTAAATGTTATGTCAGTGGGACTGTACTGTCTGTGGAACTTAG150.2534640081108483No Hit
GTCACCTTCAGCGAGACCTATTTCCTCCCCACCCCCAGAAACCTCTTGTG150.2534640081108483No Hit
CTCTTTCCCTACACGACGCGGGTGCGGGTGGGCCGAGCAGTGTGGACATC150.2534640081108483No Hit
GACTGTGAAATTGGACCAATTGGCTGGCATTGCCTAGATGACAAGAACAG150.2534640081108483No Hit
GCTCCCACCCCACCCCCAAGTTCTAAGGTCTCTTCAGAGCGTGGAGGTGT150.2534640081108483No Hit
GACAAGATGGGGCAGGAGCCTTCCTAGAAGGATGACATGAGGATGAGGCC140.23656640757012504No Hit
GGTTAAACTTGAAACAAACAATTTTAAGAATTATTTGGTCTGAAGATGTT140.23656640757012504No Hit
GAGCCTCTGAAGGGAGTGCCATTGGCTTTATTTACTTCTCTCCTCTGCTA140.23656640757012504No Hit
GTGAATGACGGCGTGGAGGACCTCCGCTGCAAATACATCTCCCTCATCTA130.21966880702940184No Hit
GCACAATGTTTGCTGGATTTGTATGCTACTTTTATTATTATTTATTTGAG130.21966880702940184No Hit
CCATTAAGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGA130.21966880702940184No Hit
GTTTGAATGTGCTGGTAACTGCTTTGCTTCTTGAGTAGAGCCACCACCAC130.21966880702940184No Hit
ACTCAAGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCAGAGGTT130.21966880702940184No Hit
CTCCAGCCTGGGCAACAAAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA130.21966880702940184No Hit
GAAAACTACCTGTGGGTTAAGGATGTAGTTCCTTTGTAAGGGTGGGCAGG130.21966880702940184No Hit
GTTTGGATTTTAATTGTGATGCAGAAGTTATAGTAACAAACATTTGGTTT120.2027712064886786No Hit
CTGTGCTATAATGTACTGAAACCACCATATTACAGAAATATTTACTACAT120.2027712064886786No Hit
GCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGGTCTACATCAACTATT120.2027712064886786No Hit
GGTGGATGTTTACCGTGTGTTATTTAACTTCCTGGCTCCTTCACTGAACA120.2027712064886786No Hit
CTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTG110.18587360594795538No Hit
CACCATGCCTGGCCTGCTTGCTTCTTTTATATACCCTCCCTTTAAAATTT110.18587360594795538No Hit
GTGAAATAAACAGCTTTATTGCTCACAAAAAAAAAAAAAAAAAAAAAAAA110.18587360594795538No Hit
ATATTGCTGTGAACAGTGGTGCCCATTGTAGCATATGTTTGATTTTTTTT110.18587360594795538No Hit
ACCCCTAAAACCCCTAAGTGAGGTTGCCCAGGGGGTTGTCCCCAGGTGGG110.18587360594795538No Hit
GTATTCCAGCCTGGGCAACAGAGTGAGACTGTCTCTCCTTTATTTAAAAA110.18587360594795538No Hit
GGGGACCTGCCCCCTCCTCAGGCATCTGGGAGGGCCCTGCCCCCATGGGC110.18587360594795538No Hit
GGAAGTGCCTGGCCAAACAGAGGCAGAGGATGCTGCAAGAGAGAAAAGCT100.16897600540723218No Hit
GCATAAAGAAGAAAAGCACAAAGAAGAAAAACATAAAGAGAAGAAGTCAA100.16897600540723218No Hit
GGCGGATTGAGGATGTCACCCCCATCCCCTCTGACAGCACTCGCAGGAAG100.16897600540723218No Hit
GATGAGTTGTTGACCAGTTATGTCTCAAGATTCATAACTGAAGTAGGCAC100.16897600540723218No Hit
GGTCTGGGGGGCTTCCAAGCTGGTGCCCGTGGGCTACGGTATCCGGAAGC100.16897600540723218No Hit
CATTTTGAAATAAAATTTATGATTCATTAAAAAAAAAAAAAAAAAAAAAA100.16897600540723218No Hit
CCTTCTGTCACCATATCTGAAAAACTTCAAAAGGACATTAAGGATCTGGG100.16897600540723218No Hit
AGCTTGTTGTGGTGGCGTGCACCTGTAATCCCAGCTACTTGGGAGGCTGA90.15207840486650895No Hit
ACTAAAAGGACTGGTGTAATTTAAAAAAAACTAAGGCAGAAGGCTTTTGG90.15207840486650895No Hit
ATATATTGATATGTATTACACTTACACATACAAACACATATAAGAGGGGG90.15207840486650895No Hit
ATGTCTAAATTACAGTGGACAGAAATGGCATGCTGAGACTGGAATTTTTT90.15207840486650895No Hit
GCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGC90.15207840486650895No Hit
GTGTATTCTAGATCATCTAAGATCCATGCTGATTTTTATTGCACAAGAAT90.15207840486650895No Hit
ACCCATGACATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA90.15207840486650895No Hit
AGCCTGAGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA90.15207840486650895No Hit
CTCGCCCCACCAGAAGTTGTCATGGACCCAGCTTTGGCAGCACAGTATGA90.15207840486650895No Hit
GGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGC90.15207840486650895No Hit
GGGGAGTGTTAGCAGCGAGGCCTTCCTCACTCAGGAGTGGAAACTCAGAT90.15207840486650895No Hit
GCCACTACAACAGAATTTTTTAAATTGACAGTTGCAGAATTGTGGAGTGT90.15207840486650895No Hit
GTTGGGATGAATTTCAAAACGCCTCGGGACCTGTTTGAATTTTTTCTGTA90.15207840486650895No Hit
GGTGCTTCCAGACCAAGACTTGGGCCACCACTTGTCCAATAAAGTACATC80.13518080432578572No Hit
CAGCAGCATCAGGCCCGGCAGGCTGCCTCTTAGCCCACCACCCTGGCCTG80.13518080432578572No Hit
GTTTGAAGAGAGGGAACAACACGGTTTAGAAAGAATCCCCATTCCAGCAG80.13518080432578572No Hit
GCTGTGATCAGTGATTTTCAAACCTCAAATATAGTATATTAACAAATTAC80.13518080432578572No Hit
AAGTGACTGTTCACAGACCTCAGTGATGTGAGCACTGTTGCTCAGGAGTG80.13518080432578572No Hit
TCCCTACACGACGCGGGGATCAGACTCTGAAAAAAAAAAAAAAAAAAAAA80.13518080432578572No Hit
ATCTCTTACCGTATATGCGTAGTATTTGAGTTGCGAATAAATGTTCCATT80.13518080432578572No Hit
GTGGTGTCTTGGTACATTGCTTGGCTGGCATTAGCCGCTCAGTCACTGTG80.13518080432578572No Hit
GCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTCTTAACTATCCTAAC80.13518080432578572No Hit
CCTTAATAAAGGCCCCACTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAA80.13518080432578572No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTC80.13518080432578572No Hit
GCGCGGGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGC70.11828320378506252No Hit
ACCATCACCGCACTGAGATCAACAAGAAGATTTATAAGATTGGCCAGGGC70.11828320378506252No Hit
CATTTTTGTGTATCAAATTTCCATTGTCATTAAAAACTGTATCTTGAAAC70.11828320378506252No Hit
ATTTCAAATGCTTATAAAGCTACTATTGTAGATTATAGTGTTAATGCAAA70.11828320378506252No Hit
GGTAAATACGGCATCATCTGCATGGAGGATTTGATTCATGAGATCTATAC70.11828320378506252No Hit
GGATATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70.11828320378506252No Hit
CCTCTAGTCCCAGCTACTTGGAAGGCTGAGGTGGGAGGATTGCTTAAGCC70.11828320378506252No Hit
CCACCTGACCAACCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCG70.11828320378506252No Hit
GGAGAACCACCCCCACCTCCCCGTATCTACTAAACGTACAAAAATTAGCC70.11828320378506252No Hit
CATGCTGACACAGACTCACTCAGAGACCCTTAGACACTGGACCAGGCCTC70.11828320378506252No Hit
GGAAAGACAACGGTTTGTGTGCACTTCCCGACATACCTGTGTCTTCGTGT70.11828320378506252No Hit
TTAATATCCTGTAATAAAGCTCTTTAAAATGAAAAAAAAAAAAAAAAAAA70.11828320378506252No Hit
CCATTAAGAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAG70.11828320378506252No Hit
GCTGGTTTTGAACTCCTGGCTTCAAGCGATCCTCCTGTCTCGGCCTCACA70.11828320378506252No Hit
GGATTCATCTTTCTCTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGC70.11828320378506252No Hit
AGCCTGAGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG70.11828320378506252No Hit
GTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70.11828320378506252No Hit
CATCTAGCTGTATCGAGGCATCAGGCCTGAATAAACATCCTTTCTTAAAA70.11828320378506252No Hit
TTATTATGTCCTACAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70.11828320378506252No Hit
CTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTTT70.11828320378506252No Hit
GAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGG70.11828320378506252No Hit
TCCCTACACGACGCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGG70.11828320378506252No Hit
CTTTCCCTACACGACGCGGGCAGTGAGCTGATAGCATGCCATTGCACTCC70.11828320378506252No Hit
ACTGATGGCAGCAATCCATGAGGTGTGTCAAAGAGTGTACATATGTATGT70.11828320378506252No Hit
GCATAATTGTTAAGAACACGTGTATTAAATTCATGTAAGTGGAATAAAAG60.1013856032443393No Hit
GAATAAACAGTTGGCAACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
ATAAATTGCTTTTCTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
GCCACCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
GGCCCCATCATGGGAAGTTTTCTGTATGCTCCTTTCCATTCTCTGCATAT60.1013856032443393No Hit
ATGTTTTTCTGAGCTTCTGTAAATGCCATCCCAATGTGGTTTGGTTTTGT60.1013856032443393No Hit
AATCAAAAGAGCTAACAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
GGATCTACATGGTGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCTG60.1013856032443393No Hit
ATGGACACCAACTCTACAACATTACCTGTCATATACTGAAGAATCTCTTC60.1013856032443393No Hit
GGATAGGATATTAAAAATGATTGAAACCCAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
GAATTTGGGTGGGGGTTGGGATCCTGTCTGAAGTACAGACTGTTCTTGCT60.1013856032443393No Hit
GACCTGGTTGTGGGGCTGTGCACTGGGCAGATCAAGACTGGTGCCCCTTG60.1013856032443393No Hit
GGGTATCCGCCTCACCATTGCTGAAGAGAGAGACAAAAGACTGGCGGCCA60.1013856032443393No Hit
CATGTAGCCAAGACTGGAGAAACAATGTGAGTTGAAAACATGCATTTGTC60.1013856032443393No Hit
TCCCTACACGACGCGGGGTCCACAAAAAAAAAAAAAAAAAAAAAAAAAAA60.1013856032443393No Hit
GCTTAAGAAGCTGGATCTCCTGCCGGGCGTGGTGGCTCATGCCTGTAATC60.1013856032443393No Hit
ATCCAAGTGTTATACCAACTAAAACCCCCAATAAACCTTGAACAGTGAAA60.1013856032443393No Hit
CAGTTCTCCATTTTTCTAAGGGAATGCAATAAATGTAGCATCGTGAATAA60.1013856032443393No Hit
CACCGTGGGCTGTTACTTGCTTTGAGTTGGAAGCGGTTTGCATTTACGCC60.1013856032443393No Hit
CTGAAACTGTTCGGAGCATTCTGAAAATAGATGATGTGGTAAACACTCGA60.1013856032443393No Hit
GGCCACGCAAGATGGCGCCGTCCGCCTTGCTGCGTCCCCTTTCCCGGCTG60.1013856032443393No Hit
ATTATAAACTTACCCATTGGATCTAAACCATCCAGATTAGATGTCACCAA60.1013856032443393No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)