FastQCFastQC Report
Wed 8 May 2024
EGAF00002876119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences234827
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA53322.2706077239840394No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA7620.3244942021147483No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5380.2291048303644811No Hit
CTTCCGATCTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4820.2052574874269143No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC3640.15500772909418423No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG3040.1294570045182198No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA2610.11114565190544529No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)