FastQCFastQC Report
Wed 8 May 2024
EGAF00002876136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences227192
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA59302.6101271171520124No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4200.18486566428395365No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA3190.14040987358709814No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC3060.13468784112116622No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC2900.12764533962463467No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA2720.11972252544103666No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)