FastQCFastQC Report
Tue 7 May 2024
EGAF00002876160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30558
Total Bases2.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3971.2991687937692258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1980.6479481641468683No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA650.2127102559068002No Hit
GTCTCAGGATACAAAATCAGTGTACAAAAATCACAAGCATTCTTATACAC330.10799136069114472No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC310.10144642974016624No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)