FastQCFastQC Report
Tue 7 May 2024
EGAF00002876162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31575
Total Bases2.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5641.7862232779097387No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2820.8931116389548693No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1030.3262074425969913No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC550.17418844022169439No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA400.1266825019794141No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC380.12034837688044339No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG330.10451306413301663No Hit
CCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAA330.10451306413301663No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)