FastQCFastQC Report
Tue 7 May 2024
EGAF00002876164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25083
Total Bases1.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2380.9488498186022406No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1360.5421998963441375No Hit
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGT460.1833911414105171No Hit
GATCATGCCACTGTACTCCAGCCTGGGTGATAGTGCGAGACTCTGTCTCA420.1674440856356895No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA420.1674440856356895No Hit
GGTAAGAGATTATTTTTTGCTTTTGAAAAATGTTATTTTAAAAAATCATT260.10365586253637922No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)