FastQCFastQC Report
Tue 7 May 2024
EGAF00002876165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55535
Total Bases3.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4910.8841271270370037No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4740.8535158008463131No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1820.32772125686504006No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA730.13144863599531825No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT670.12064463851625101No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG590.10623930854416135No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)