FastQCFastQC Report
Tue 7 May 2024
EGAF00002876177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44541
Total Bases2.9 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29286.57371859634943No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1600.3592195954289306No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA550.12348173592869492No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT480.1077658786286792No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)