FastQCFastQC Report
Wed 8 May 2024
EGAF00002876181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121000
Total Bases7.9 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50924.208264462809917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7060.5834710743801653No Hit
GTTATTAGGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT1660.1371900826446281Illumina Single End PCR Primer 1 (100% over 39bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)