FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121000
Sequences flagged as poor quality0
Sequence length66
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49904.12396694214876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6630.5479338842975207No Hit
GTTATTAGGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATC1550.12809917355371903Illumina Single End PCR Primer 1 (100% over 55bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)