FastQCFastQC Report
Tue 7 May 2024
EGAF00002876204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71300
Total Bases4.7 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39265.506311360448808No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3930.5511921458625526No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC960.13464235624123422No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG850.11921458625525946No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG820.11500701262272091No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)