FastQCFastQC Report
Wed 8 May 2024
EGAF00002876213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366062
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA115563.1568422835475958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25330.6919592855855019No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC8650.23629876906097871No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGAGAGGCGAGG4680.12784719528385902No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGG4470.1221104621621474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)