FastQCFastQC Report
Tue 7 May 2024
EGAF00002876214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13481
Total Bases889.7 kbp
Sequences flagged as poor quality0
Sequence length66
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12599.339069801943475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG750.5563385505526296No Hit
CTTCAGAGTGGACTTGTGTTTTTTCTTTTTAAAGAGGCAAGGTTGGGCTG220.16319264149543802No Hit
ATCTGCTTCCATCCCGCCAGTTTGGTTTCATTGTACTGACAACCTCAGCT170.12610340479192939No Hit
GTCCTTACGATACTGAAACTTTACAGCTGCTGTAAATTTTTTATAAATGA150.11126771011052593No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA140.1038498627698242No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)