FastQCFastQC Report
Wed 8 May 2024
EGAF00002876223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170001
Total Bases12 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA22761.3388156540255647No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12850.7558779066005494No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA2570.1511755813201099No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT2450.14411679931294522No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG1870.10999935294498267No Hit
CATTACCTGAATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACGT1850.1088228892771219No Hit
GTGCATGCATGTTGGGGTTTCCTTTACCTTTTCTATAAGTTGTACCAAAA1710.10058764360209645No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)