FastQCFastQC Report
Wed 8 May 2024
EGAF00002876227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533474
Total Bases37.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38130.714748984955218No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29330.5497924922301743No Hit
GGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAA8340.15633376696896195No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG7030.13177774362012018No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC6840.12821618298173856No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5510.10328525851306716No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)