FastQCFastQC Report
Wed 8 May 2024
EGAF00002876238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1132899
Total Bases80.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG92690.8181664914524595No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA48880.43145946814323255No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC25280.22314434031630356No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG23350.20610839977791487No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA20290.17909804845798258No Hit
GGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAA12100.10680563757228137No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)