FastQCFastQC Report
Tue 7 May 2024
EGAF00002876245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20662
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5502.661891394831091No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG950.45978124092537026No Hit
ATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGC440.21295131158648728No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA330.15971348368986546No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA300.14519407608169585No Hit
ATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAAT280.1355144710095828No Hit
GGTCTGGACAACAAGCTCCGTGAAGACCTGGAGCGACTGAAGAAGATTCG280.1355144710095828No Hit
TCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCA260.12583486593746976No Hit
CATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGA250.12099506340141322No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA250.12099506340141322No Hit
GTATGAGATGGTTAAAAAGGCCAAAGATAAAAGGTTTCTTTTTTTTTCCT250.12099506340141322No Hit
GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCT240.1161552608653567No Hit
ATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTT240.1161552608653567No Hit
AATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACAC230.11131545832930016No Hit
ATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGA220.10647565579324364No Hit
TCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCAT220.10647565579324364No Hit
GCTGTGACTAATCCAATATACTCAGAATGTTATCCATCTAAAGCATTTTT220.10647565579324364No Hit
GAGTATGTCACCTTCCTGGGGGCCTTGGCTTTGATCTACAATGAAGCCCT220.10647565579324364No Hit
CCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATA210.10163585325718712No Hit
GTCAGAGCGAGAAGCCCGGAGGTTGCGCTGAGCTTGGCTGCTCGCTGGGT210.10163585325718712No Hit
GCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAA210.10163585325718712No Hit
ACTTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCC210.10163585325718712No Hit
CTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGT210.10163585325718712No Hit
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCT210.10163585325718712No Hit
GTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGT210.10163585325718712No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)