FastQCFastQC Report
Tue 7 May 2024
EGAF00002876247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40566
Total Bases2.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10232.5218162993639996No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG880.21693043435389242No Hit
CTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAG660.16269782576541933No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA420.10353498003253957No Hit
TTCCAATACTGCACACATAAGATACATACTTGTGTGCAGAAAGTATCTTC410.10106986146033624No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)