FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17752
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7244.078413699864804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG980.5520504731861199No Hit
GTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACGTCAACATTGGGAGCCTC390.21969355565570076No Hit
GTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATAT360.202794051374493No Hit
GCATAGGATGGAACCCATATTACAAGAATACGAAGAAGTCTATGGAAACACATATCATGCATACCTTCAAA360.202794051374493No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGC270.15209553853086977No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACC260.14646237043713384No Hit
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCC220.12392969806219017No Hit
AAATAAACTTATTAGGAAGCATTTTCTTAAAGTGTTTTTGCTGTCTTTTCTATCTGCTCTAATGTTTTGGT210.11829652996845426No Hit
TATTGAAACGGTGTGAAGACGGATTCTTTGGTTGATAAATTGCTATCATTCTAAAGTCATGGACTTCACTT200.11266336187471834No Hit
ACATTATCTGCATATGCCAAAAAATTTTAAGCAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCAT200.11266336187471834No Hit
GTTCAAGGAAATTGCTGCAGTTATTGAAACGGTGTGAAGACGGATTCTTTGGTTGATAAATTGCTATCATT200.11266336187471834No Hit
GGCTGGTCTCGAACTCCTGGGCTCAAGCGGTCCACCTGCCTCCGCCTCCCAAAGTGCTGGGATTGCAGGCA200.11266336187471834No Hit
CCCTACACGACGCGGGCTGCCAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCTAAAAGACGAAATAC200.11266336187471834No Hit
GGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTT200.11266336187471834No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGC190.10703019378098243No Hit
AATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCATCAGAGTGAACAGGCAATCTACAGAATGGG190.10703019378098243No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA190.10703019378098243No Hit
TACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAAC190.10703019378098243No Hit
TAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTT190.10703019378098243No Hit
CCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAA180.1013970256872465No Hit
GTGTTTTGTGGTTTCTGTATTTCTTCTTTTCACTTTACCAGAAAGTGTTCTTTAATGGAAAGAAAAACAAC180.1013970256872465No Hit
CCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTA180.1013970256872465No Hit
GTAAACTTTACATCCAGGGGATGAAGAGCACCCACCAGCAGAAGACTTTGCAGAACCTTTAATTGGATGTG180.1013970256872465No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGG180.1013970256872465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)