FastQCFastQC Report
Tue 7 May 2024
EGAF00002876259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24104
Total Bases1.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7353.0492864254895453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG680.28211085297046135No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA510.211583139727846No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC370.15350149352804512No Hit
TATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTC350.14520411549950216No Hit
GTTTAAGCCCATCGAGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGAT330.1369067374709592No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTT330.1369067374709592No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA330.1369067374709592No Hit
GAATACAGCCCTCCACCCCCACATATTTCATATGAAGATTTCTGAAGATT310.1286093594424162No Hit
GTTTCAGGTGGTTTTAAAGAACACGTGGAAATCCCTTGAATTTAGGACCT290.12031198141387323No Hit
GTGTAAACAGTAGACACCCAGAAATCGTGACTTCTGTGTTCTCTCCATTT280.11616329239960171No Hit
AACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGC280.11616329239960171No Hit
TCCTTACACCTTATACAAAAGTTAATTCAAGATGGATTAAAGACTTAAAT280.11616329239960171No Hit
TCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAG270.11201460338533023No Hit
GGATAAGGATGCTAAATTCCGTCTGATTCTAATAGAGAGCCGGATTCACC260.10786591437105875No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC250.10371722535678725No Hit
GCTGCAGCTGGGGCTGGCATGGACTTTCATTTCAGAGATTCGGTTTTTAA250.10371722535678725No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)