FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24104
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7152.9663126452041157No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG580.24062396282774645No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA320.1327580484566877No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTC310.1286093594424162No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG300.12446067042814471No Hit
GTTTAAGCCCATCGAGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGCCTGGATGGTCACCTCT300.12446067042814471No Hit
TATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCC290.12031198141387323No Hit
GTTTCAGGTGGTTTTAAAGAACACGTGGAAATCCCTTGAATTTAGGACCTGGTTAACCAGAAAGATAAGAC270.11201460338533023No Hit
AACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAAC260.10786591437105875No Hit
GAATACAGCCCTCCACCCCCACATATTTCATATGAAGATTTCTGAAGATTTTCCAGTGTCACTTCCTCTTT260.10786591437105875No Hit
TCCTTACACCTTATACAAAAGTTAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAACCATAAAA250.10371722535678725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)