FastQCFastQC Report
Tue 7 May 2024
EGAF00002876261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31677
Total Bases2.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5201.6415695930801526No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2450.7734318275089181No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA550.17362755311424694No Hit
GTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATT450.14205890709347474No Hit
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGT410.1294314486851659No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGC410.1294314486851659No Hit
CTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAA380.11996085487893424No Hit
AATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACT360.11364712567477982No Hit
GCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGA350.11049026107270259No Hit
TAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGAC320.10101966726647094No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG320.10101966726647094No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)