FastQCFastQC Report
Wed 8 May 2024
EGAF00002876296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1380404
Total Bases98 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG101890.7381172468349845No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA62550.4531282146386131No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA17710.12829577428057293No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)