FastQCFastQC Report
Wed 8 May 2024
EGAF00002876308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1033019
Total Bases73.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG117321.1357003114173119No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40980.3967013191432104No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)