FastQCFastQC Report
Wed 8 May 2024
EGAF00002876330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208197
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15930.7651407080793671No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCA4410.21181861410106773No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTT4060.1950076129819354No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGA3990.1916454127581089No Hit
CTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGC3060.14697618121298578No Hit
CCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAG2920.14025178076533285No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGA2760.13256675168230092No Hit
AACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACAT2520.12103920805775299No Hit
TCTCCGGGGTGTGTGAAATCAGTGGCCGCCTCTACAGACTCTGCTGTCGC2250.10807072148013659No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2220.1066297785270681No Hit
CTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAG2150.10326757830324165No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)