FastQCFastQC Report
Wed 8 May 2024
EGAF00002876343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510103
Total Bases36.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57191.1211461214695855No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA30450.5969382654091429No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC13560.265828665975303No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC8490.16643697449338662No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA8360.1638884695835939No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA8260.16192808119144564No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT7680.1505578285169858No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC5440.10664512853286494No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)