FastQCFastQC Report
Wed 8 May 2024
EGAF00002876367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences980828
Total Bases69.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG99671.016182246020709No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA34880.3556179065034848No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18020.1837223244034632No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)