FastQCFastQC Report
Wed 8 May 2024
EGAF00002876386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1020204
Total Bases72.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG108601.0644929837561898No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA68850.674865026994601No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA22120.21681938122179484No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC18470.18104222292796343No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG11430.11203641624616253No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT11030.10811563177560567No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC10260.1005681216697837No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)