FastQCFastQC Report
Wed 8 May 2024
EGAF00002876395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences935624
Total Bases66.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA81380.8697938488110608No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG78350.8374090446589655No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA41840.44718818670748084No Hit
GGTAAGAGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG21910.23417526698759333Illumina Single End PCR Primer 1 (100% over 41bp)
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT13580.14514377570477027No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG11490.12280574247774748No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA11350.12130941489316222No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC10830.11575162672184552No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT10210.10912503313296794No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)