FastQCFastQC Report
Tue 7 May 2024
EGAF00002876409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3317
Total Bases235.5 kbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1865.607476635514018No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1675.034669882423877No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC461.3867952969550799No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG421.2662044015676817No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG150.4522158577027435No Hit
GAAAGGAATTACGATTATATCACCCGGACACACATCATGCTTAAGATTCA110.33162496231534516No Hit
GCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAAC100.3014772384684956No Hit
GTTACGGAATCTACCATTTTAAAGTTAATTGCTTGTCAAGCTATAACCAC70.21103406692794696No Hit
GAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCTTATG70.21103406692794696No Hit
GCCTTCTGTACTTGAAGTTGATTTGAAATATGTAAGAATTGATGATGTAT70.21103406692794696No Hit
GAAGAGGAGGATGATGAAGATTTCGAAACAGCTGTCAAGAAACTTAATGG70.21103406692794696No Hit
CAATGTAACCATATGGAAGCAACTTTTTTGGTGTCTCAAAGGAGTAACTG70.21103406692794696No Hit
GAAAAGAAAATATAGTTTGATTCTTCATTTTTTTAAATTTGCAAATCTCA70.21103406692794696No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTC70.21103406692794696No Hit
ATAGAAGTTATTCAAAGGCTTATTCCAGACGAGGTGCTGCTCGATTTGCT70.21103406692794696No Hit
CCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCA60.18088634308109736No Hit
TCTCCTTATTTCATTATTTGTCTTCATATTTAAAATATCTTCTGTGATAT60.18088634308109736No Hit
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGT60.18088634308109736No Hit
ACATTCACACCTCTGTCCCTCAAAATTGATAATTACGTTTAAAGTGCAGT60.18088634308109736No Hit
GACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAG60.18088634308109736No Hit
GTTTGCTTTGATCTTCTTCAATATGTGAATTTGGGCTCACAGAATCAAAG60.18088634308109736No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC60.18088634308109736No Hit
ACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTC60.18088634308109736No Hit
CCCTCCAGGGTTTGGGTCACTTTGCGTTTGTCGAAGCCTCCTCTGAATGG60.18088634308109736No Hit
GCCTGCTGCATAAACTCTTAAATTTGATTATTCCATAAAGGTCAAATCAT60.18088634308109736No Hit
ATATCGAGATAGTAAAATGACAAGAATCCTTCAAGATTCATTAGGTGGCA60.18088634308109736No Hit
GTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAGGACAAGGCT60.18088634308109736No Hit
CACTAAATAAACTAAGAAGAGAAGAGCAGTTCCTCAACCTGATACACAGC60.18088634308109736No Hit
ATGTTGGTACTAGCCATTAACTTAAAGGTGGTGGGAAAAAAGCACATACT60.18088634308109736No Hit
ACCATGATCAGAGTGCCATGGCCACTACCCCACTGTTTGCTCTCCTGCAA60.18088634308109736No Hit
GCTAAAGCACACAAATAAAAGAGTTCCTGATCACCTGAACAATCTAGATG60.18088634308109736No Hit
GCTTTCTGCATGGATGGTCAGTCTCTTGCCCTCAAACACTATAGCAAACA60.18088634308109736No Hit
CTGTGACTACTATGGCTGTTTAGAACTACTGATAACGTATTTTGATGTTT60.18088634308109736No Hit
GGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGAGTGCTTAGTTGAAC60.18088634308109736No Hit
GTGACTGGAAGCAAACGCCCTAAAAGTTACCCATCACGTTTCAGTGTAAA60.18088634308109736No Hit
CCTGGCTCCCTGGGGGTTGTGGATGGGGGTATAAGAGGCTCGATTTTGCC50.1507386192342478No Hit
GTGTTACTCCAGTGGCACGAAAAGGCCTTAGCAGTAGGAGGACTAGGCTC50.1507386192342478No Hit
ACATCACCAGTTGACTTCTGCATTAACCTGCATGATCTGTTTCTACTATG50.1507386192342478No Hit
ACTCAGGAGGCTGACGCAGGAGAATGGCATGAACCCGGGAGGTGGAGTTT50.1507386192342478No Hit
TTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGC50.1507386192342478No Hit
GAACTGAAGGAATTAGAGACATAAAAACCCTTCAAAAAATTAATGAATCC50.1507386192342478No Hit
GGAAAATTTCTTTGGAAAGATATTTTGTAAAACTTTTTTTTCCAAGTAAA50.1507386192342478No Hit
ACAAATAATTGCCCCCTTTGTTTTAAAAAGAAGAAATGCATATTGAAGTA50.1507386192342478No Hit
ACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGA50.1507386192342478No Hit
ATATATTCCTTTGTATATTGAAGAGAAAATATACTCGGGAAAAATGAGTG50.1507386192342478No Hit
GTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTT50.1507386192342478No Hit
CATGGAGTTGTTCCTTTGGCCACATATATGCGAATCTATAAGAAAGGTGA50.1507386192342478No Hit
GGAATTCCGTTGACTTGTTGGCTGCCAGTAGGGGCGGGAGGAAAGGCGGA50.1507386192342478No Hit
GCCATACATAGAATGCTTCAAGCTATCTTGCTATGCACATTATACTTGTA50.1507386192342478No Hit
GTGTCCTATTACTGTAAATCTCCTGGTTTATAATTCTTATGGAAACTAAT50.1507386192342478No Hit
GATTTTCCTACCCGTGGCCCAGGTCTGTGCCTTCCCCATGCCAAGGACTC50.1507386192342478No Hit
GCAAGCCCTGTTTTAGGGACTACATAAGATGAGGGGAGATAAGGGGGACA50.1507386192342478No Hit
TTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCC50.1507386192342478No Hit
GTAATCAGTGTAAACAGAGCTTCAGCCAGAGAAGGAGCCTTGTTAAACAT50.1507386192342478No Hit
AGACGTGCTCCTGCTGACCTTCTGCGGCTCCGGGCTGTGTCCTAAATGCA50.1507386192342478No Hit
CTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAGGG50.1507386192342478No Hit
GAAATGGGATGGACTGAACGGACAGTTCCAGAAGTGTGACTGGCTAAAGC50.1507386192342478No Hit
GCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTC50.1507386192342478No Hit
CTATAACTACTTCCTAGTCAAAGAACGAAATGTAACTGTTACCGAGTTAA50.1507386192342478No Hit
CAATGTAACCATATGGAAGCAACTTTTTTTGGTGTCTCAAAGGAGTAACT50.1507386192342478No Hit
GTTCCAGAAGTTCTGAGGCTGGACATCGGCCCGCTCCCCACAATGAAATA50.1507386192342478No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA50.1507386192342478No Hit
GCCTTAAAAATATCCTTGATGTACAGATTTTATTTGTAATTTTAAAAGTC50.1507386192342478No Hit
GTATGCATGATTTAACAACTATCCAAGGTGATGAGCCTGTGGGACAAAGA50.1507386192342478No Hit
ACTTAGGCTAAGTTAATTTGGATTTGTTACTTGATTCACCTACTGACCTT40.12059089538739826No Hit
GGGGTGGAAGAAGTGGGGTGGGACGACAGTGAAATCTAGAGTAAAATCAA40.12059089538739826No Hit
GGCTCTTAGTCTAAACCTGTGGCCTCTGCCACGTGCTCCCTGCCAGCTTC40.12059089538739826No Hit
GTTACTGGGAGCTGCTATTTTATATTATGACTGCTTTTTAAGAAATTTTT40.12059089538739826No Hit
CCCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTCCCCCTGGGCCACT40.12059089538739826No Hit
GTGGATTCTGTTGAAGGAGAGGGTGAGGAAGAAGGAGAGGAATACTAATT40.12059089538739826No Hit
ACCGGAAATACCATGCACAGAGTCCTTAAAAAATAGAGTGCAGTATTTAA40.12059089538739826No Hit
AGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAG40.12059089538739826No Hit
GGCCCACGTGCACGTGACTGCCCTCTGTGGAAGCCAGCTTAAACCCTAGC40.12059089538739826No Hit
GTAGTCCGCCACAGGGCTCTGAGCTGCACTGGCCCCGGTGCTGGCATCTG40.12059089538739826No Hit
GGTTATTCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAGTAATCAT40.12059089538739826No Hit
GCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTGCTTTCTTGAT40.12059089538739826No Hit
GCAACGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATAAGAGGCGCA40.12059089538739826No Hit
CCTTGGTACAGAGCCGCAGTGTGAGCCTGCGCAGGACAGTTTCAGGTGGT40.12059089538739826No Hit
GCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAA40.12059089538739826No Hit
GCTTGTTAAGATAGTTAAGCGTGCATAAGTTAACTTCCAATTTACATACT40.12059089538739826No Hit
CCTTGTTCAATTGGAGAATTTTAATGTTTTTCATTTATCATTGTAAAACC40.12059089538739826No Hit
GATTCTATAGCAGGGGCTTAAATTCACTGGAATCCACCCTGACTTTTCCT40.12059089538739826No Hit
CCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTCCCCCTGGGCCACTC40.12059089538739826No Hit
GCCCTGGTGGCCTTTTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGA40.12059089538739826No Hit
GTGTATCAACATTATTTAATGTCTTCTAATTCAGTCATTTTTTTATAAGT40.12059089538739826No Hit
CACATGTGTGACCTCTCTGACTTCTCTTCCTCCACCAAGGCAGCTTTCCT40.12059089538739826No Hit
GCTCAGGAGTAACAAGTTGCTAATATGCAGAAGGGATGGGTGATACTTCT40.12059089538739826No Hit
CTCTGCCACTGGGCTGCAAAAAAATAAATTACTTGAATCTCCCCTTGGCC40.12059089538739826No Hit
GGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGA40.12059089538739826No Hit
GAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAAGTGGGGTGGG40.12059089538739826No Hit
GGATATGGAGTTAAGAACAGAAGGCATGAGGCCTGAACACCAGGATTCTG40.12059089538739826No Hit
GTGTTATAAAAAAGGGAAGGATAAAACCTTTGACATCCCCTTGTGTCTCA40.12059089538739826No Hit
TGTGTAAGTTTTGCAGTGTAATACATATGTAGTCTGGTCTGTATATATGA40.12059089538739826No Hit
CTGTTGAAATGATGGAGGAATCCAGTGGACCATATTCTGATGGAACAGAA40.12059089538739826No Hit
AATCTGAAGTCAGTAAATGAACTAATCTACAAGCGTGGTTATGGCAAAAT40.12059089538739826No Hit
CTGTGCTAAATGTCTTGTGGCAGGGTGTGTTTGTGGGGGAGTGTTCACTG40.12059089538739826No Hit
AAAATCCCTGAGGGACATTTTGAGGCATGAATATAAAACATTTTTATTTC40.12059089538739826No Hit
GCCGCCTGGGACCCACCAGGGTGCAGCTGGGCTCCAGGGTCCAGCCCACA40.12059089538739826No Hit
TATCTGCTGTGGCTTGGCTGTTGTAACAGTCTCTACAACTGCTGGCTTCG40.12059089538739826No Hit
ATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTC40.12059089538739826No Hit
ATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCA40.12059089538739826No Hit
CTATGTGTAGCATCTTGCTGTAAATCCTGTACAATGATTCTGTGTAAATA40.12059089538739826No Hit
CAGCTTCCCTTGCGTTTAAGGCCTGCCCTAGCCAGGGCTCCCTCCTGCTT40.12059089538739826No Hit
ACAATAAATTATGGAGAAAAATACATATTTGGCTAACTTTTAATTGCTGA40.12059089538739826No Hit
GGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAA40.12059089538739826No Hit
GATTTCACCAGGCTCTTTAAGAAACTTGTGTTTGGTGGTGATGCTTGTCT40.12059089538739826No Hit
GCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTT40.12059089538739826No Hit
GCTCTGTAAGCTGTTATTGACTCATCCACCAGATGAAAATGATATAAACA40.12059089538739826No Hit
GCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAA40.12059089538739826No Hit
GTGTATTTCTGTGAAGTCATTTTTTTTCTTGTCATTCCTTTTGTAGTAGT40.12059089538739826No Hit
GACGACTATAAGAAGCAAAAAGAAACTGAACTTAATAAAGTAATAGCTCA40.12059089538739826No Hit
GAGGAGAGGTGGCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCG40.12059089538739826No Hit
GCCCTGCCCCCATGGGCTTTACCCTTCCCTGCGGGCTCTCTCCCCGACAC40.12059089538739826No Hit
GGGGAGAAAGAGGGGTCTTATTGTACATGTCCAAGGGGGGTGATAAGAGT40.12059089538739826No Hit
AAACAAAATGGTCATTTTGCATATACTTCACTCTGACCTAGTTTAGTCCA40.12059089538739826No Hit
GTGCACTCCTAGGCTTGGTGTCTCAGACATTGATGTACCTTTTCCCTGCC40.12059089538739826No Hit
AGCCATTTCCATGATGATGATGATGGGACTCAATTGTATTTTTTATTTCA40.12059089538739826No Hit
GAGTTAATGGTCACTAGATTATCAGTTATGAGCAGTGTTAAAATCTCCTA40.12059089538739826No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA40.12059089538739826No Hit
GTTTTTTTTTTATGAGGCTCCTGAGAATCAACCCAACTGAAGCATTTCAA40.12059089538739826No Hit
AAGCTTTTCATCTCTCCAGGGGGAAAACTGTCTAGTTCCCTTCTGTGTCT40.12059089538739826No Hit
GCCTCTGCCAGGAGTCTACCAAATGAAGAAATAGTGCAGAAGATAGAGGA40.12059089538739826No Hit
GTAGAGGTACACTTGTGAATAAAGAGGGTGGGTGGGTATAGATGTTGCTA40.12059089538739826No Hit
GAGTGAACTTCTTATGGGAGGCTGCAGCTGGATCAGAGGAAAAATCCAGT40.12059089538739826No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC40.12059089538739826No Hit
GGGTCAGTGTGGTCGACAGAGTGGCTGAGCAGGACACACAGGCCTGAGCA40.12059089538739826No Hit
GATTTTTTAAGGGAAAGAGAACTAAGGGAAACACTTGAGAAGCAGTTGGC40.12059089538739826No Hit
GGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAA40.12059089538739826No Hit
GTGTAACTTACAGTTTCCTTTAAAAAAAAAAAAAGTAAACCTGGCAGCTA40.12059089538739826No Hit
GCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTCAA40.12059089538739826No Hit
GGGCAACATAGAAAAAGCCGGTCTCCATAAAAAATTAGTCAAGCATGGTG40.12059089538739826No Hit
TCTCCGATCCTGTGGTACTTGAATATCCAAAAACCCTGCACTTTGAACAA40.12059089538739826No Hit
GTGTGGAAAGCGGCTGTGCAGACATTCAATTGTTGTTATTATGTCCTACA40.12059089538739826No Hit
CACAGGTTAGTGTGGACATCCCCTTGTGTGTTGGACTCATAATCTGAAGA40.12059089538739826No Hit
GAGCAGGTGACTGGAAATCTAACTCAGTATATTTCCGTGTATTATAGTGT40.12059089538739826No Hit
CCTCAAGCTCCGGGGAAAGGACATTGGAAAGCCCATCGAGAAGGGGCCTA40.12059089538739826No Hit
GTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAA40.12059089538739826No Hit
GATGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAAGAAAC40.12059089538739826No Hit
GAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCC40.12059089538739826No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGG40.12059089538739826No Hit
TCCTTAAATTTAGTTTAATGATTGTAATGGGTGCTGCATTTGCACATTGC40.12059089538739826No Hit
TCTAACTCTCATTTGACAAGCAGAGAAAGAAAAGTTAAATACCAGATAAG40.12059089538739826No Hit
ATTGTAGGCATCTGTAAATTCTGTTGTAGGTATTATAAACTTTGTTGAAG40.12059089538739826No Hit
ATCACAGTTTGCTTTGATCTTCTTCAATATGTGAATTTGGGCTCACAGAA40.12059089538739826No Hit

[FAIL]Adapter Content

Adapter graph