FastQCFastQC Report
Wed 8 May 2024
EGAF00002876421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2257025
Total Bases160.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA108100.47894905904896934No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA105570.46773961298612116No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51540.22835369568347716No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC44710.19809262192487898No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA33590.14882422658145125No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC28930.12817757889256876No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG25530.1131135011796502No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)