FastQCFastQC Report
Wed 8 May 2024
EGAF00002876470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540563
Total Bases38.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71251.3180702341817698No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA18090.3346510952469925No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15190.28100332431187486No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC11730.2169959838168724No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAG9580.1772226363994576No Hit
GGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGTCCACAT8800.16279323594104667No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC7780.1439240199569708No Hit
CCCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGT5710.10563061104811095No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGG5690.1052606264209722No Hit
GCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTCTTAACTATCCTAAC5570.10304071865813975No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)