FastQCFastQC Report
Wed 8 May 2024
EGAF00002876493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385953
Total Bases27.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31560.817716146784712No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA28410.736099991449736No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA12630.32724191805738007No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA8560.22178866338647452No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC7190.1862921132884056No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC4360.11296712293983983No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC4200.1088215404466347No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)