FastQCFastQC Report
Wed 8 May 2024
EGAF00002876516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433723
Total Bases30.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGA29240.6741630026537675No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26630.6139863461241392No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25580.5897773463708403No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCA17970.4143197386350274No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGA13920.3209421681580179No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTT13130.30272777786744076No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA8590.1980526741722251No Hit
CTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAG7410.17084636968756556No Hit
GTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGTC7230.16669625544414293No Hit
CTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGC6930.15977939837177185No Hit
CCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAG6700.15447647461628736No Hit
AACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACAT5710.1316508462774628No Hit
TCTCCGGGGTGTGTGAAATCAGTGGCCGCCTCTACAGACTCTGCTGTCGC5640.1300369129605762No Hit
GGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGTCTTTCTA5630.12980635105816385No Hit
TCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTG5560.12819241774127726No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5500.12680904632680304No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC5430.12519511300991645No Hit
GTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTCTGT4530.10444454179280324No Hit
CATTTTACTCTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATA4430.10213892276867956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)