FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002876516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433723
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25390.5853966702250054No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTC25090.5784798131526343No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23610.5443566515956036No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTA13410.3091835111349871No Hit
GTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAA6720.1549375984211121No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGC6510.15009579847045235No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCATTAAAAAAAAAAAAAAAAAAA6210.14317894139808127No Hit
CTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTG6200.14294837949566888No Hit
CCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTC6100.1406427604715452No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTTTCAGCAAAAAAAAAAAAAAAA5290.12196724637614328No Hit
GGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAA5180.11943106544960724No Hit
AACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGT5070.11689488452307117No Hit
TCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCT4880.11251420837723616No Hit
TCTCCGGGGTGTGTGAAATCAGTGGCCGCCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACC4810.11090027506034958No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTA4370.10075555135420533No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGACCCGTATTTACCCTATAG4370.10075555135420533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)