FastQCFastQC Report
Wed 8 May 2024
EGAF00002876551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1171847
Total Bases83.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG182391.556431855011789No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA79370.6773068497849974No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA46040.3928840539763297No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC22040.18807916050474166No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA19280.16452659775550904No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCAT14060.11998153342543864No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC12810.10931461189046009No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT11830.10095174540703693No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)