FastQCFastQC Report
Wed 8 May 2024
EGAF00002876594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537868
Total Bases38.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15660.29114950136464707No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11960.22235938929254018No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5450.10132597588999531No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)