FastQCFastQC Report
Wed 8 May 2024
EGAF00002876608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences656399
Total Bases46.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG14770.22501557741556583No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14220.21663652747795167No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT13700.20871451662784374No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13580.20688636027781881No Hit
TCCCTACACGACGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9050.1378734580643785No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA7500.11425977187655678No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)