FastQCFastQC Report
Tue 7 May 2024
EGAF00002876622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2098
Total Bases148.9 kbp
Sequences flagged as poor quality0
Sequence length71
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA42820.400381315538606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG271.2869399428026693No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG211.0009532888465205No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA110.5243088655862727No Hit
CACTAAGGAAATGCTGAAGCTTTTGGACTTCGGCAGTCTGTCCAACCTTC110.5243088655862727No Hit
GCTTGTGGACTTCACCCCAACAAAATTGTAAGCGTTGTTAGGTTTTTGTG100.47664442326024786No Hit
GGCTGGTCTCAAGCTAGTGAGCTCAAGTGATCCTCCTGCCTTGACAGGGT90.42897998093422307No Hit
GTTCAAGATCAGCCTGGCTAACATAGTGAAACCCCGTCTCTACTAAAAAT90.42897998093422307No Hit
CTGTTTTACTATGATGTAAAAATTAGGTCATGTACATTTTCATATTAGAC70.3336510962821735No Hit
GGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAG70.3336510962821735No Hit
GGATTAACTTCTGCCAGCTCAGACCATTTCCTAATCAGTTGAAAGGGAAA60.2859866539561487No Hit
GGTTTAAGGCAAACTGCCATCCTTAGTCCACAGTTTGAGGGTGGATTCTT60.2859866539561487No Hit
CTGAAGTGGGGAGGATCACTTGAGCCCAGGAGGCAGAGATTGCAGTGAGC60.2859866539561487No Hit
GGTCCCAGCACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCC60.2859866539561487No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.2859866539561487No Hit
CTGTAACATTTGGGGGGTGGGACAGGGAGGAAAAGTAACAATAGTCCACA60.2859866539561487No Hit
GTGTATTTGTTACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.2859866539561487No Hit
GTGTGCAGATATGTATTTATATTTGCCTTAACCTTCAAAATCTAGGGACA60.2859866539561487No Hit
GGTGTGAGCCGCTGCGTCCAGCCTAATTCAGTAGAAGATTTAAACAATTT50.23832221163012393No Hit
GGACTGACAGACCCCAGGACCAGCCCTGGGGCTCAGGGCAGCCACCCCGG50.23832221163012393No Hit
GTATCAGTATTTCCCATTGCTAGCCCGAATAATCAAGACCAGACTGTTTC50.23832221163012393No Hit
ACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACA50.23832221163012393No Hit
CCAGAGGCTCCTACCCCAAAGATTTTCACAGAAACTTGAGGCCAGGTGCC50.23832221163012393No Hit
ACGCGGGGCAGCATCCAGTTCATCTTAAGAATGTCAACGATTAGTCATGC50.23832221163012393No Hit
CCTGTCTCCTCCTGCAGGGCCCACCCTAAGAATGTATTTTTAAACACATG50.23832221163012393No Hit
GGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGAC50.23832221163012393No Hit
GCGACTTCTGAAGGGCCCCTTGCAAAGTAATAGGGCTTCTGCCTAAGCCT50.23832221163012393No Hit
GGTTTAAGCCTCATGATGATCCTGAGACTTGTCTTGTTGCTGCTCTGAGC50.23832221163012393No Hit
GTTGTTAAGAGAGAGGACATTCAGCAGTTCTTTGAAGAGTTTCAGTCAAA40.19065776930409914No Hit
CTAAAATACAGACAGAGATAATAGAACAAGAAGATTTAATTAAGGCTCTG40.19065776930409914No Hit
GATGCTGGCAACAGGGAGGACCAGATCAACAGGCTTATTAGAAGAATGAA40.19065776930409914No Hit
CATAAAAGGGCATCAGAAAAATACAAAGACAACCCATCAATATCAGGAGC40.19065776930409914No Hit
AGTCTAACCAACATGGAGAAACCCCGTCTCTACTAAAAACACAAAAATTA40.19065776930409914No Hit
CTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCGTGCCTGGCTGTGAT40.19065776930409914No Hit
ATAGCGTTCTTGTAATTTTACACGCTTTTGTGATGGAGTGCTGTTTTGTT40.19065776930409914No Hit
GTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATTGACTTGCACA40.19065776930409914No Hit
GCCCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAACCCCCATCTCT40.19065776930409914No Hit
GGGCCTGTTTTGGAGGAGGAAAAGGGCTTGTACATAAATGTAAAACAGTA40.19065776930409914No Hit
GGAATAATACTATCGCTATTCATTATAGCTACTCTCATAACCCTCAACAC40.19065776930409914No Hit
GCTTTTCTGTCCCTTTGCTCCCGGCAAGCGCTTCTGCTGAAAGTTCATAT40.19065776930409914No Hit
ATCTGTATGTTGGATGACTTTAATGCTACATTTTAAAAAAAGAAAATAAA40.19065776930409914No Hit
GGGCTTCACCTAGAACTTCAGTGGGGGCCAAGGGTGCTGAGAACCCAGCA40.19065776930409914No Hit
GCAAAGGGGATTTTGGGCAGGGTAATCCTGTAATTCCAGCACTTTGGGAG40.19065776930409914No Hit
CCGCTCATCGCCGGCAAGTAGGGGCCGCCTGTCTGTTGACAGAACTCACT40.19065776930409914No Hit
GAGTATCGCCCAAAAATCAAAGGAGAACATCCTGGCCTGTCCATTGGTGA40.19065776930409914No Hit
CCTCAGGTGATCTGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACCGGC40.19065776930409914No Hit
CTGCTCCTGAATTAAAAACTGGTATCAGCGATGTTTTTGCTAAAAATGAT40.19065776930409914No Hit
CCAACTGGCCATCAGAGTCACCAACCCCAATGCCAGGCTGCGCAGTGAAG40.19065776930409914No Hit
GTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.19065776930409914No Hit
GTATGTAGAAGGGCTGTTAAAAATGTAAAACTTGGTTGCATTATTTGTGG40.19065776930409914No Hit
CTGCCATGCCCAGCCAGTCCCCACAGCATAACAGGGTCTCCTTGGCAGCT40.19065776930409914No Hit
GAGTTCTCATTAAAAGAAATTTGCTTTCATTGTTTTATTTCTTAATTGCT40.19065776930409914No Hit
GTTATAGTTTACTCAGCTTCACTGTTACATCCTAGATGAGTATTGTATTC40.19065776930409914No Hit
CCTCTACCACCACCCTGTACCCTAGCCTGCACCTGTCCTCATCTCTGCAA40.19065776930409914No Hit
GGCTTAACTGGATGCCATAAGACAACCCTGGTTCCTTTGTGAACCCTTCT30.14299332697807435No Hit
GAATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACATCTAAAAA30.14299332697807435No Hit
CCTGATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAAAC30.14299332697807435No Hit
GCCCAAATGCAACAAAATTTCTTCTACAGAACCTATACAGATGTATCTTG30.14299332697807435No Hit
GACCTCCTGCTGGCTCTCGCCCACCAACCAAGTGTTACAAGCCCCAGAAT30.14299332697807435No Hit
TCCCTACACGACGCGGGAGTGAGCCGAGATCATGTGATTACATTTCACCC30.14299332697807435No Hit
GGCAGGAGAATCGCTTGAACCTGGTGGGTGGAGGTTATAGTGAGCTGAGA30.14299332697807435No Hit
ACACGACGCGGGATGTAGGTTCAGGTTTCTACCATGGACTTTAGGTATAT30.14299332697807435No Hit
GCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAG30.14299332697807435No Hit
GTTTATAAATCTTAAATGTTTGTATATTTTTCATTTGCAATAAAATGTTA30.14299332697807435No Hit
GGAACATGAGCATGCTGCAGACCCAAGACCTCGTGAAGTCGGTCCAGGCC30.14299332697807435No Hit
GCAGAATAATCAAATACATTTTAAGCAAGTTAAGTGTCCTCCATCAATTC30.14299332697807435No Hit
GGATTTCATAATTGTCATTGTCACACTTTCAAATTTTTGTACATCAGTGA30.14299332697807435No Hit
ATATTGTATACTACCATAGTGAGCCATGATTTTCTAAAAAAAAAAATAAA30.14299332697807435No Hit
GTGCTCAGACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTGTGCTG30.14299332697807435No Hit
TCACTTCCTTGGGGACCTGGCTTCATTCTGCTCTCTCTTGGCACCCGACC30.14299332697807435No Hit
GGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGA30.14299332697807435No Hit
GTGTAAGATTTTCCCTAAAACTAGAATATATTAATGCATGTTTGAGAATT30.14299332697807435No Hit
AATTAAGGGTATAAAGAAGGGATGGTGAGGCCGGGCATGATGGCTCATGC30.14299332697807435No Hit
GAGCGGGTGAGCGGGGTGGGCACAGCCCCCTTCACTGCCCTCGACAGCTT30.14299332697807435No Hit
ATACTTAATTTCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
GTGACTATTCTGTGGTTCTAGCTTTTGCAGGTGGCCCCAGCTCCTGGACT30.14299332697807435No Hit
GCACTGACTAGGCCCTCTGCTGCCAGCTCCAAGCCCAGCCCTCAGCCATG30.14299332697807435No Hit
CCAAGATGGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTGGACA30.14299332697807435No Hit
GGTTCTTACTTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
CTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
GGCTGGATGATTGGGACTTTAAAACGACCCTCTTTCAGGTGGATTCAGAG30.14299332697807435No Hit
GCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGC30.14299332697807435No Hit
GAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
CTAGGAGGCCCAGGCGCAGGCAAAGAGAAGATGGTGCTGTCATGAAATAA30.14299332697807435No Hit
ATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGAC30.14299332697807435No Hit
CCTTTAATGACCCGTACTGAGACCACAGCTTCTTGGCCTCCCTTCCAGCT30.14299332697807435No Hit
CCTTAGAACTTCTACAGAAGCCAAGCTCCCTGGAGCCCTGTTGGCAGCTC30.14299332697807435No Hit
CTATAATGGAGGATACCAACATTTCTTCCTAATATTCTATAATCTCCAAC30.14299332697807435No Hit
AAGCTAACTGTGTGTTTAGAAGGCACTGTAACTGGTAGCTAGTTCTTGAT30.14299332697807435No Hit
GTGCCTAGAATACCGTCAGGCACATAGTGGGTGCTTGGGCAGTGTTTGTA30.14299332697807435No Hit
CCTCCACTTCCCGCTGCAGCCAATAAAGGCCGTTCCTACCATAAAAAAAA30.14299332697807435No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14299332697807435No Hit
GAGCAGCTCTGCTATGAGTGTGTGTGTGTGTGTGTGTTGTTTCTTTTTTT30.14299332697807435No Hit
GCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGA30.14299332697807435No Hit
GCCCCTGTGGCTGCTGCCACCACAGCTGCTCCTGCTGCTGCTGCAGCCCC30.14299332697807435No Hit
GGGACAAGAAACAGAACTGTTTACTAACTTTGGGACATCCCCTGGAGTTT30.14299332697807435No Hit
GCCCTGTTGGCAGCTCTAGCTTTGCAGTCGTGTAATTGGCCCAAGTCATT30.14299332697807435No Hit
GGGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTAGCAGTGAGCTGA30.14299332697807435No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)