FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97924
Sequences flagged as poor quality0
Sequence length71
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA62126.343695110493853No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4000.40848004574976515No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCACGAGATCGAGACCAGCCTGAT2000.20424002287488258No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT1850.18892202115926637No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG1620.16543441852865487No Hit
TCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCACGAGATCGAGACCAGCCTGATCAACATG1240.1266288141824272No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATT990.10109881132306688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)