FastQCFastQC Report
Wed 8 May 2024
EGAF00002876650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2401666
Total Bases170.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA236130.9831925005392089No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG162760.6776962325319175No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA38280.15938935722119563No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC26450.1101318834509045No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC24100.10034700911783737No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)