FastQCFastQC Report
Tue 7 May 2024
EGAF00002876656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42284
Total Bases3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13313.1477627471383975No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1540.36420395421436No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1360.3216346608646296No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1030.2435909563901239No Hit
GATTTTATATCATAGTACCCACAATCTAACAGATTGCTAGGATTTCTAAA920.21757638823195535No Hit
ATTCAAGACCAGAAGCTTTTTGACAGAAACTCTCTCCCAGTGCCTGTCTT770.18210197710718No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC730.17264213414057325No Hit
GGTCAGACTCCTAAGGTGGCCAAACAGGAGAAGAAGAAGAAGAAGACAGG700.1655472519156182No Hit
TTCAGAAACTAAATGACTTTCAAATTTGGGTATAGACAATAAAGAACTGA670.15845236969066315No Hit
TCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAAC650.15372244820735975No Hit
AGTCAATGGAAACCTGATTTGTTTTTCAGTTACTTTATATTTATTTTGTA640.15135748746570807No Hit
GGCAAATACCTTTGCCTCTCGGGTAAGCTCCCTTGCTGAGAGGGTCGACC630.14899252672405638No Hit
TCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTA630.14899252672405638No Hit
CTGTATTAGGGGTTATGGCAACATTATTGAATTTTTTATGTACATAAAGC630.14899252672405638No Hit
GATCTATGAAAAAGTAGAATAAAAATTCCATCATCACTTTGGACAGGAGT620.1466275659824047No Hit
GTACCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTACCTAGAA620.1466275659824047No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC620.1466275659824047No Hit
GTATTCAGCGTCTGTCCACTCCCTCGATGGCTTCCGACACCAGGCCCTCT610.144262605240753No Hit
AACGAATTGAAGAACTTGAAAATCTGTTACAACAAGGTGGCTCTGGAGTT600.1418976444991013No Hit
ACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAA600.1418976444991013No Hit
GTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAAT590.13953268375744962No Hit
GTACCCAAAGGATAAAGAAGGTGAATTTATTTTCCCCTTCTCATTTTTAG590.13953268375744962No Hit
CCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTG590.13953268375744962No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG580.13716772301579794No Hit
ATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAAC580.13716772301579794No Hit
CTTAATGCCTGGAAACAAAATCTGAACAAAGTGAAAAACAGCCTTTTGAG560.13243780153249457No Hit
GCCTACATATTCTTGCAGAGACTGTGCAGTTGATCCAACTTGTGTTTTGT560.13243780153249457No Hit
GCATATGTGGGGCGCCTCAGTGCCCGGCCCAAGCTCAAGGCCTTCCTGGC550.1300728407908429No Hit
TTATAACAGTGAGCTCATCTGACTGTTTTAGGATGTACAGCCTAGTGTTA550.1300728407908429No Hit
GATGAATACTTGGATATTACTGAAAGGGAGGGGTGGAGATGGGTGTGGCA550.1300728407908429No Hit
GCCTCCTAGAGGCTGAGGGGGCAACGGTGTGATCCAGCTGGCTCATCCCA550.1300728407908429No Hit
GGGATATGTATGGGTAGGGTAAATCAGTAAGAGGTGTTATTTGGAACCTT540.12770788004919117No Hit
ATGGTGTAGAACACTAATTCATAATCACTCTAATTAATTGTAATCTGAAT540.12770788004919117No Hit
CCCGAGGCACCTGGACCAGCTATGGGTAGTTCTGTGGGTGGAACACATTC540.12770788004919117No Hit
GCTTTACTCAGGAGCATCCTAATATCTCCTGTGCATTCTCTGATTCCTTT530.1253429193075395No Hit
GCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCAT530.1253429193075395No Hit
GAATATGCTCCAAAGAAGAGAATTGAGCCCCTGAGTCCTGAGTTGGTGGC530.1253429193075395No Hit
TATCTTGTGTGGAAAGCATGTAGATTATAAGAATGTACAGCTTTTGTCCC530.1253429193075395No Hit
GAAAATACCTGTGTACTGAGGGTTATGATTTGTGTCAAAAATTGACATAA520.12297795856588781No Hit
ACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGT520.12297795856588781No Hit
CAATTAGACACTTTGGAAGATGGCATAACCTGTCTCACCTGGACTTAAGC510.12061299782423612No Hit
GAATTAATGCGGCCATATCTTCATGAATTTCTAACATCTGCCTATGAAGA510.12061299782423612No Hit
TTACGAACCTGCAGATACAGCTCTGTTGCTTGACAACATGAAGAAAGCTC510.12061299782423612No Hit
ACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTG510.12061299782423612No Hit
GTATTGGATTTTATGGGGATAGACATTATTTATAATGGAGAATCTTAATC500.11824803708258443No Hit
ATGTATTATACCTACTTTCTTTTTATTTCATTTACAAATAGTTTAAATTA500.11824803708258443No Hit
GTTTCATTCATTGGAATGAGGAGGAGAACACAATTAAAAAGATGAAATGT500.11824803708258443No Hit
GTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAGGA490.11588307634093273No Hit
CAAGATACTCGTGTAATAAACTTGTACGTGTACCCCCCACCAAATCTAAA490.11588307634093273No Hit
ACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGAC490.11588307634093273No Hit
CTCCAAGGTCCTCTGAGGCAGCAGGCTCTGGGGCTTCTGCTGTCCTTTGG490.11588307634093273No Hit
CCTATATTCCTAAAAAGTGTGAACAATGCGTTTCAGTTGACTGTATTGCA490.11588307634093273No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG490.11588307634093273No Hit
CTCTATAGCAATGCAAACAAACTAAGACAAATGCTTACATAAAAAAGTAG490.11588307634093273No Hit
GTGCCTCGCTGAGGAAAAATAACTAAACATGGGCAAAGGAGATCCTAAGA490.11588307634093273No Hit
ATCTAATAAGCTAAAAGCCATGGAGTGCATAAAATAAATTTTGTACATAC490.11588307634093273No Hit
GATCTTTAAAATCTAGTTGGAAAATCCAGGAATAATTTTTTAAAAAGACT480.11351811559928106No Hit
CATCCTAATAAGGTATATTTCAGAATAATTTTTTTTTCCTTCAGAATAAC480.11351811559928106No Hit
CCTACCGCAGCCTGCTCGAGGGACAGGAAGATCACTACAACAATTTGTCT480.11351811559928106No Hit
GGACAACAGAGAGTGGGAATTCCAAAAGTATGGGCACTAGGAAAAGACTT480.11351811559928106No Hit
CTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATC480.11351811559928106No Hit
AGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGA480.11351811559928106No Hit
GTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCA480.11351811559928106No Hit
GCATTATAATCAAATATACATCTTTTTGCAGTACATTTGGGATTTGATTT480.11351811559928106No Hit
GGTATGAAGATCGGGCGGATTGAGGATGTCACCCCCATCCCCTCTGACAG480.11351811559928106No Hit
CTCAAATGTTGTTTAACTGCTTTAAATTCATATACGTAGAGTATTATAAA480.11351811559928106No Hit
GGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGT470.11115315485762936No Hit
GATCCCCATCATCATTCGCCGTTACCTGCCAGATGGGAGCTATGAAGACT470.11115315485762936No Hit
GAGGTAATCAAGCATGGGATGGGCTGGATGCGGTGGCTCATGCCCATAAT470.11115315485762936No Hit
GTCCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCT470.11115315485762936No Hit
GTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCC470.11115315485762936No Hit
CTCTAAAAGAGAGGGCGGATTCCCTGGCCAAGGAGATCCAGTACCTGAAA470.11115315485762936No Hit
CCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCG470.11115315485762936No Hit
TATATATACTGTGCTGTGCTAATATTAGTCATGGCTGAGAGTCTTTCTGT470.11115315485762936No Hit
AGACATTATTTATAATGGAGAATCTTAATCAAAACAAAAAATGTATTGTT460.10878819411597768No Hit
ATACAAAGAAGGAGTGGATGGGAATGATGAGAAAAAGGAAATAAGAGGGG460.10878819411597768No Hit
GTTCTGCCACTGGGGCATATAATGCCTTGGAAACAAACATTATTCCATCA460.10878819411597768No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG460.10878819411597768No Hit
CCCCCATCTCTGTGACTTCCTGGAGACTCACTTCCTAGATGAGGAAGTGA460.10878819411597768No Hit
AAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAG460.10878819411597768No Hit
GGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATG450.10642323337432598No Hit
GAAGTATTCACAGAGATCATCGATATAGGATGACAACATCAGGAGGTGGA450.10642323337432598No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT450.10642323337432598No Hit
GTCCAAATCTGGGGAGGACAAGGAGAGGAGAGTAACCCTATTCTAAAGCC450.10642323337432598No Hit
CTTTATAAATATTTATGATACATGACTGAACATGTTATATATACTGTGCT450.10642323337432598No Hit
CTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCC450.10642323337432598No Hit
TAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTC450.10642323337432598No Hit
GTAAGGTGCTCAAGGACGCATCAAATGAATGAACAAAGACTAGAGACAGA450.10642323337432598No Hit
ATCATAATCCATACATTCATTTCCATGTTGTTTGACTAGCAGTGCATATA450.10642323337432598No Hit
CGTCTGTGCAGGCCCTGTAGTCCGCCACAGGGCTCTGAGCTGCACTGGCC450.10642323337432598No Hit
GCTATGTAGTGTTTTGCTTCATTGAGAGTCATTTTCATGAATTATTTTTA450.10642323337432598No Hit
ATTCTGTATGTAATCTCACAATAAGAAAACTATAAAACAACCATGTAAAT450.10642323337432598No Hit
CCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTT450.10642323337432598No Hit
GTTGTCTACATTATAGTTGTAGTAGATTTTATTTCTAGTTTTTACCTTTT450.10642323337432598No Hit
GATCAGCGGTATTGAAGCCCAGCTGGGCGATGTGCGAGCTGATAGTGAGC440.10405827263267431No Hit
ACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGT440.10405827263267431No Hit
ATTATCCAGGATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGGAT440.10405827263267431No Hit
CTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTG440.10405827263267431No Hit
TCTTTCACAAAGGGAAGAAGAGAGAAATAACCATGGGCCGCGCGCGGTGG440.10405827263267431No Hit
CTTTATACTTCATTTCTAGCCCAGTTGGGTTTTGATTTATATAAGTAGTT440.10405827263267431No Hit
CCTTGGAATGTAGCAATCTATAACCAATCAAAGCACTGTAACATATGCAC430.10169331189102261No Hit
GGTTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAACAAGAAAAT430.10169331189102261No Hit
GTTATCACTAAATCTTAGGGAAATAAATGGAAGGATTTTAAATCAGAGAA430.10169331189102261No Hit
GTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGAT430.10169331189102261No Hit
ACTTGAGAGGCTGAGACAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTT430.10169331189102261No Hit
ATTCTATTCCATTGGTCTATGTGTCTTTTTATACCAGTCTCATATAGCTA430.10169331189102261No Hit
AGAAGATGCTGTTCTTCTGAGAGATACGTTACTCTCTCCTTGGAATCTGT430.10169331189102261No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)