FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002876656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42284
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12853.03897455302242No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1280.30271497493141614No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT970.2294011919402138No Hit
GATTTTATATCATAGTACCCACAATCTAACAGATTGCTAGGATTTCTAAAAGGATTTGCCTCCGTGATGGC890.21048150600700027No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG870.2057515845236969No Hit
ATTCAAGACCAGAAGCTTTTTGACAGAAACTCTCTCCCAGTGCCTGTCTTAGAAACATACAATACCTGTGA730.17264213414057325No Hit
GGTCAGACTCCTAAGGTGGCCAAACAGGAGAAGAAGAAGAAGAAGACAGGTCGGGCTAAGCGGCGGATGCA680.1608173304323148No Hit
TTCAGAAACTAAATGACTTTCAAATTTGGGTATAGACAATAAAGAACTGAAGTGCTCACTACTCAGTGATT670.15845236969066315No Hit
AACGAATTGAAGAACTTGAAAATCTGTTACAACAAGGTGGCTCTGGAGTTATAGAAACTGATCTCTCTAAA600.1418976444991013No Hit
GTACCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTACCTAGAAGAGAGGCGGGTCAAAGAAGTA600.1418976444991013No Hit
GGCAAATACCTTTGCCTCTCGGGTAAGCTCCCTTGCTGAGAGGGTCGACCGACTACAGGTTAAAGTCACTC580.13716772301579794No Hit
ACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAGGTTTCTTTTTTTTCCTTTTT580.13716772301579794No Hit
GATCTATGAAAAAGTAGAATAAAAATTCCATCATCACTTTGGACAGGAGTTAATTAAGAGAATGACCAAGC580.13716772301579794No Hit
AGTCAATGGAAACCTGATTTGTTTTTCAGTTACTTTATATTTATTTTGTATTCAATGTGTAAATACTTTTA570.13480276227414625No Hit
GTACCCAAAGGATAAAGAAGGTGAATTTATTTTCCCCTTCTCATTTTTAGAACATTCTCAAAATAAACACT570.13480276227414625No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTC570.13480276227414625No Hit
CCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTC570.13480276227414625No Hit
ATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCAC570.13480276227414625No Hit
CTTAATGCCTGGAAACAAAATCTGAACAAAGTGAAAAACAGCCTTTTGAGTCTTTCTGATACCTGAGTTTT560.13243780153249457No Hit
CTGTATTAGGGGTTATGGCAACATTATTGAATTTTTTATGTACATAAAGCCATATGTTTAGGGTGGTTTCT560.13243780153249457No Hit
GTATTCAGCGTCTGTCCACTCCCTCGATGGCTTCCGACACCAGGCCCTCTGGGACCGCTACATGGGCACCC550.1300728407908429No Hit
GCCTACATATTCTTGCAGAGACTGTGCAGTTGATCCAACTTGTGTTTTGTGCATGGAGTGCTTTTTGGGAA550.1300728407908429No Hit
CCCGAGGCACCTGGACCAGCTATGGGTAGTTCTGTGGGTGGAACACATTCTGTGTAAGAGCCCCACTGAGG540.12770788004919117No Hit
TTATAACAGTGAGCTCATCTGACTGTTTTAGGATGTACAGCCTAGTGTTAACATTCTTGGTATCTTTTTGT540.12770788004919117No Hit
GGGATATGTATGGGTAGGGTAAATCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGGACAGTTTACCAGTT530.1253429193075395No Hit
TATCTTGTGTGGAAAGCATGTAGATTATAAGAATGTACAGCTTTTGTCCCAGTTTGTTTCTCCATTTACTG530.1253429193075395No Hit
ATGGTGTAGAACACTAATTCATAATCACTCTAATTAATTGTAATCTGAATAAAGTGTAACAATTGTGTAGC520.12297795856588781No Hit
ACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGAT510.12061299782423612No Hit
GAAAATACCTGTGTACTGAGGGTTATGATTTGTGTCAAAAATTGACATAAGTGCTTTTACAAGCACCAAAG510.12061299782423612No Hit
GCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAAC500.11824803708258443No Hit
CAATTAGACACTTTGGAAGATGGCATAACCTGTCTCACCTGGACTTAAGCATCTGGCTCTAATTCACAGTG500.11824803708258443No Hit
GCCTCCTAGAGGCTGAGGGGGCAACGGTGTGATCCAGCTGGCTCATCCCAGCCCAGGTGGGCCAATTATTC500.11824803708258443No Hit
GTTTCATTCATTGGAATGAGGAGGAGAACACAATTAAAAAGATGAAATGTTATATTCTGTGGTTAAAGAAT500.11824803708258443No Hit
CAAGATACTCGTGTAATAAACTTGTACGTGTACCCCCCACCAAATCTAAAATTGTTTAATAAAATATTTTT490.11588307634093273No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG490.11588307634093273No Hit
GCTTTACTCAGGAGCATCCTAATATCTCCTGTGCATTCTCTGATTCCTTTTGTGGTGGGATCTTTGTTCCT490.11588307634093273No Hit
GAATTAATGCGGCCATATCTTCATGAATTTCTAACATCTGCCTATGAAGATTATGACATTGTTATTTGGTG490.11588307634093273No Hit
CATCCTAATAAGGTATATTTCAGAATAATTTTTTTTTCCTTCAGAATAACTTAGAATCAGATGCTATAAGG480.11351811559928106No Hit
AGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAG480.11351811559928106No Hit
TCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATT480.11351811559928106No Hit
ATCTAATAAGCTAAAAGCCATGGAGTGCATAAAATAAATTTTGTACATACTGTTTTTAAAGAAACTTTTTA480.11351811559928106No Hit
GGACAACAGAGAGTGGGAATTCCAAAAGTATGGGCACTAGGAAAAGACTTCTTCCATCAAGCTTAATTGTT480.11351811559928106No Hit
CCTATATTCCTAAAAAGTGTGAACAATGCGTTTCAGTTGACTGTATTGCATACTTTTTTGCTGAAGACTTT480.11351811559928106No Hit
CTCAAATGTTGTTTAACTGCTTTAAATTCATATACGTAGAGTATTATAAACTGCAGAGATGAAAAATGTGT480.11351811559928106No Hit
ACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAGAGGAACAGCTC480.11351811559928106No Hit
GTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGG480.11351811559928106No Hit
GTATTGGATTTTATGGGGATAGACATTATTTATAATGGAGAATCTTAATCAAAACAAAAAATGTATTGTTA480.11351811559928106No Hit
GATGAATACTTGGATATTACTGAAAGGGAGGGGTGGAGATGGGTGTGGCAGTGTATGGTGTGTGATTTTTA480.11351811559928106No Hit
CTCTATAGCAATGCAAACAAACTAAGACAAATGCTTACATAAAAAAGTAGAAAGATTCCAAATAAACATTC470.11115315485762936No Hit
GATCTTTAAAATCTAGTTGGAAAATCCAGGAATAATTTTTTAAAAAGACTGAAATCGTTGGCTTCATAAAC470.11115315485762936No Hit
CTCTAAAAGAGAGGGCGGATTCCCTGGCCAAGGAGATCCAGTACCTGAAAGATTTGATAGAAGAGGTCCGC470.11115315485762936No Hit
CCTACCGCAGCCTGCTCGAGGGACAGGAAGATCACTACAACAATTTGTCTGCCTCCAAGGTCCTCTGAGGC470.11115315485762936No Hit
GTGCCTCGCTGAGGAAAAATAACTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCAT470.11115315485762936No Hit
ACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCT460.10878819411597768No Hit
CCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCGAAAGGCTCACTCTCAAGCACG460.10878819411597768No Hit
GGTATGAAGATCGGGCGGATTGAGGATGTCACCCCCATCCCCTCTGACAGCACTCGCAGGAAGGGGGGTCG460.10878819411597768No Hit
GTCCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAA460.10878819411597768No Hit
ATGTATTATACCTACTTTCTTTTTATTTCATTTACAAATAGTTTAAATTACTTTATCAACCAGCTGTATTG460.10878819411597768No Hit
CTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTC460.10878819411597768No Hit
GCATTATAATCAAATATACATCTTTTTGCAGTACATTTGGGATTTGATTTTACCCTCTAATCTCAGTATTG450.10642323337432598No Hit
ATACAAAGAAGGAGTGGATGGGAATGATGAGAAAAAGGAAATAAGAGGGGAAAATTAAGGATCTTGGGGAA450.10642323337432598No Hit
ATTCTGTATGTAATCTCACAATAAGAAAACTATAAAACAACCATGTAAATAAATCAGACTATCCTAAATAG450.10642323337432598No Hit
GATCCCCATCATCATTCGCCGTTACCTGCCAGATGGGAGCTATGAAGACTGGGGGGTGGACGAGCTCATCA450.10642323337432598No Hit
GGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAG450.10642323337432598No Hit
ATCATAATCCATACATTCATTTCCATGTTGTTTGACTAGCAGTGCATATATGAATGAATATGGTAATTAAT450.10642323337432598No Hit
GAATATGCTCCAAAGAAGAGAATTGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGTGGCAGA440.10405827263267431No Hit
CTTTATAAATATTTATGATACATGACTGAACATGTTATATATACTGTGCTGTGCTAATATTAGTCATGGCT440.10405827263267431No Hit
AGACATTATTTATAATGGAGAATCTTAATCAAAACAAAAAATGTATTGTTAAATCAATAGGAAAGGTTGTG440.10405827263267431No Hit
TATATATACTGTGCTGTGCTAATATTAGTCATGGCTGAGAGTCTTTCTGTGCATGGAGCATGGTGATCATG440.10405827263267431No Hit
GTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAA440.10405827263267431No Hit
TTACGAACCTGCAGATACAGCTCTGTTGCTTGACAACATGAAGAAAGCTCTCAAGTTGCTGAAGACTGAAT440.10405827263267431No Hit
GTTCTGCCACTGGGGCATATAATGCCTTGGAAACAAACATTATTCCATCATTTGTGTTGATGGATATCCAG440.10405827263267431No Hit
GATCAGCGGTATTGAAGCCCAGCTGGGCGATGTGCGAGCTGATAGTGAGCGGCAGAATCAGGAGTACCAGC440.10405827263267431No Hit
GTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAAC430.10169331189102261No Hit
ATTATCCAGGATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGGATGTTTGGGTCATTGCTGTGATT430.10169331189102261No Hit
CCCCCATCTCTGTGACTTCCTGGAGACTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTG430.10169331189102261No Hit
GGTTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAACAAGAAAATTGAAAGATGGGAAATTAGTGG430.10169331189102261No Hit
GTCCAAATCTGGGGAGGACAAGGAGAGGAGAGTAACCCTATTCTAAAGCCAGTTCCCTTATCATGAGCCTT430.10169331189102261No Hit
GTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAGAT430.10169331189102261No Hit
GAAGTATTCACAGAGATCATCGATATAGGATGACAACATCAGGAGGTGGAGGTTTCTGTGACTGTGGTGAT430.10169331189102261No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAG430.10169331189102261No Hit
TAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTC430.10169331189102261No Hit
CTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAA430.10169331189102261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)