FastQCFastQC Report
Tue 7 May 2024
EGAF00002876657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1206
Total Bases85.6 kbp
Sequences flagged as poor quality0
Sequence length71
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26922.30514096185738No Hit
ACATATGCCAGTTCCTCGTAGAGATTGGACTGGCTAAGGACGATCAGCTG433.565505804311774No Hit
ATAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCCAGCACACC362.9850746268656714No Hit
CCTTCCCAGTGGACAGATGAAGAATTAGGTATCCCTCCTGATGATGAAGA352.902155887230514No Hit
GTATGGCTCCAAAGGATGAAATTTCATTCTGATTTTCTGGCTGAAGACTA322.6533996683250414No Hit
CCCAAGGACAGGACTTGCGACCTTGAAGCCAAAGGAATCTCACTTGTGGG302.4875621890547266No Hit
GGATTTCCTTGCAATGAGTAGAATTTCCCTTCTCTCCCTTGTCACAGGTT292.404643449419569No Hit
GTTAGGGTCAGCCATTTTTAATGATCTCGGATGACCAAACCAGCCTTCGG252.0729684908789388No Hit
CATTTCTGTAGCATGTCAGTTTGGAGAAATGATGAGCTACGCCTTGATGA252.0729684908789388No Hit
GGTTGGATGGCAAGCATGTGGTGTTTGGCAAAGTGAAAGAAGGCATGAAT241.9900497512437811No Hit
CCTATATCCCTCCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAAT231.9071310116086235No Hit
GGCTCATCCCAGCCCAGGTGGGCCAATTATTCAATTTTCAAGAATTTTGT211.7412935323383085No Hit
GTTTACTAGTCAGTGAAACTACCAAAGGCTTTTGTGCTGTAGTAATCCTT201.658374792703151No Hit
GGTGGATGTTTACCGTGTGTTATATAACTTCCTGGCTCCTTCACTGAACA191.5754560530679935No Hit
ACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAA181.4925373134328357No Hit
GCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAA181.4925373134328357No Hit
GATACTCACTGTTCATGAATACACTTGATGTTCAAGTATTAAGACCTATG181.4925373134328357No Hit
CCATGGAGTGATGTGGAGCTAGGATTGTGAGTGACCTGCAGGCCATTATC161.3266998341625207No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA151.2437810945273633No Hit
TACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTT151.2437810945273633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG141.1608623548922055No Hit
GTGTAACTTACAGTTTCCTTTAAAAAAAAAAAAGTAAACCTGGCAGCTAT131.077943615257048No Hit
GACATAAATAGATGGAGATTTAGTGGAGACATGTCATTAACAAGAGTACA120.9950248756218906No Hit
TCATTAAACCTGTAAGAAATACATCCAGGAAAAAAAAAAAAAAAAAAAAA120.9950248756218906No Hit
GAAATTTACTACAGTAGTTAGAATTATATCACTTCACTGTTCTCTACTTG120.9950248756218906No Hit
TGCGTGCTCTGTGCCCCCACCAGTTTGCTCACCTCTTGGGGCATTTTGTA110.9121061359867331No Hit
CCCTTGTCACAGGTTTAAAAACCTCACAGCTTGTATAATGTAACCATTTG100.8291873963515755No Hit
GTCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA100.8291873963515755No Hit
GCCAACATTGTGTTTTACTAGAAAATTCCAATTCATGACAGTTCAGAGCT80.6633499170812603No Hit
ATGTAAGGGTCATTAGACAAATGTCTTGAAGTAGACATGGAATTTATGAA80.6633499170812603No Hit
CCTTACACCCAAGCAGTAGGTCTGTGCTCTCCCTGTCTCTAGGTCGCTGA70.5804311774461027No Hit
GTCCCTATATAGCAGGCTGATTGGGCTGCTTCTGGGATGCAAGCATTTGT70.5804311774461027No Hit
GTTTGAATTTTTTCTGTAGTGCTGTATTATTTTCAATAAATCTGGGACAA50.41459369817578773No Hit
AATTAAAGTGGCTTGGTCAAGAACGAAAAAAAAAAAAAAAAAAAAAAAAA50.41459369817578773No Hit
GTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAAT50.41459369817578773No Hit
GATGCTTTAGAAAGCAATTTTCTCTCATCAGTTTCGTCCTTATTCAGCCT50.41459369817578773No Hit
GCCGCAGGTCAGTCGTGAAGAGGGAGCTCTATTGCCACCATGAGTTTCTC50.41459369817578773No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGAAAAAAAA50.41459369817578773No Hit
CCTGAAGCAAGTGAAAAATAATGAAAGAAGTGAAAATGTCCGGTTCCTGC40.33167495854063017No Hit
GTGTTAAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.33167495854063017No Hit
CTTGGGATCTTTGACACTTGAAAAATTACACCTGGCAGCTGCGTTTAAGC40.33167495854063017No Hit
CACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGG30.24875621890547264No Hit
CCTGCAGTGGAAAGTGTATAGTGTTTTGTAATAAATGGCCTGATGCTAAT30.24875621890547264No Hit
CCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTA30.24875621890547264No Hit
TATTTCTGTTGATAAACCATTTGGACAGAGTGAGGACGTTTGCCCTGTTA30.24875621890547264No Hit
GTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTA30.24875621890547264No Hit
GGCTTCACAAATAAAGTCGTGTGGCAGCTAAAAAAAAAAAAAAAAAAAAA30.24875621890547264No Hit
GGTTGGATGGCAAGCATGTGGTGGTTGGCAAAGTGAAAGAAGGCATGAAT30.24875621890547264No Hit
TTGTTATACATACTGTGTACCTAATTATGTATAGCAGTGTAGTCTCAATT30.24875621890547264No Hit
TAATATTACTCTGCTACAAAGTGTCTCCAACTAGAAATGATCAATGAAGT20.16583747927031509No Hit
CAGTATACCCTGGCACACTTAATAAATTAAACATTTGTGGAAAAAAAAAA20.16583747927031509No Hit
GTCTTATTCTGGCAGGTTTTGACGTTTTAAATTTTTTAAAGAAATTTTAT20.16583747927031509No Hit
ATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCA20.16583747927031509No Hit
GGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCAAAAA20.16583747927031509No Hit
CAGTTGATCTCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
ATTTAATATATAGTAATAATTGTAATTCAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
GTACAAAGCATCTTAATGACACAGTAGAGTTAAAAAGATCTTTACAAATT20.16583747927031509No Hit
GTACCCCCCCCAGGCTCCTGGTGCCAGATGATGACGACCTGGGTGGAAAC20.16583747927031509No Hit
GTGAATTAAGCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
CCCTACACGACGCGGGCTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
ATCAAACTATGGGCCAAACGCCACAACATCTATTCCAATATATTAGGTTT20.16583747927031509No Hit
ACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACA20.16583747927031509No Hit
GACAATTGACAAGGAACTTATTGATCATTCTCCGAAAGCAACTCCTGACA20.16583747927031509No Hit
ACCCTTGGCCATAATATGATTTATCTCCCCACTAGCAGAGCCCAACCGAA20.16583747927031509No Hit
GAATAAAGTTAATACCAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
GATTGAATCCAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.16583747927031509No Hit
GGCAAGGAGTCTCAGGCCAAGGATGTCATTGAAGAGTATTTCAAATGCAA20.16583747927031509No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)