FastQCFastQC Report
Wed 8 May 2024
EGAF00002876670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2630460
Total Bases186.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA172010.6539160451023776No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG137050.5210115341043011No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA38910.1479208959649643No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)