FastQCFastQC Report
Tue 7 May 2024
EGAF00002876694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53885
Total Bases3.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5110.9483158578454115No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4800.8907859330054746No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG3720.6903590980792429No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA2770.5140577155052426No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1650.3062076644706319No Hit
ACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCC740.13732949800501068No Hit
GCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAA670.12433886981534749No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT670.12433886981534749No Hit
TCCCTACACGACGCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGG660.12248306578825277No Hit
GTATCTATGTCTCTGAAAAAGGAACTGTTCAGCAGGCTGATGAATAAGAT570.10578082954440013No Hit
GGATAGCATAGCTAAAACTGTTGGTGGCTAGGGGAGCAGACACAAACTAC570.10578082954440013No Hit
AAGAAGGAGAGGAGGAAAGAGGAAAGGGAAAAAAGAGAAGGGGAGGAAGA550.10206922149021064No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)