FastQCFastQC Report
Wed 8 May 2024
EGAF00002876742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120630
Total Bases8.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9600.7958219348420791No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5760.47749316090524746No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1340.11108347840504021No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)