FastQCFastQC Report
Tue 7 May 2024
EGAF00002876744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33528
Total Bases2.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4161.2407539966595085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2340.6979241231209735No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC410.12228585063230732No Hit
GTCCTGTACCAGAAACATTTTCTTTTATTTTTACTTGCTTTTTAAACTTT370.1103555237413505No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)